A Visual Tool for DNA Repeats Screening

Pop, Petre Gavril ;   Vaida, Mircea-Florin

Tags Algorithms and computational tools for proteomicsUnstructured data visualizationAlgorithms and techniques for systems modeling

DNA sequence analysis has been developing to reveal some hidden structure, to distinguish coding from noncoding regions in DNA sequence, and...

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Comparison of Unsupervised Feature Selection Methods for High-Dimensional Regression Problems in Prediction of Peptide Binding Affinity

Sarac, Ferdi ;   Uslan, Volkan ;   Seker, Huseyin ;   Bouridane, Ahmed

Tags Algorithms and computational tools for proteomicsBiomedical data-driven modelingStructural bioinformatics

Identification of robust set of predictive features is one of the most important steps in the construction of clustering, classification and...

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Inference of Nonlinear Gene Regulatory Networks through Optimized Ensemble of Support Vector Regression and Dynamic Bayesian Networks

Akutekwe, Arinze ;   Seker, Huseyin

Tags Modeling of gene/epigene regulatory networksAlgorithms and techniques for systems modelingMining clinical data

Comprehensive understanding of gene regulatory networks (GRNs) is a major challenge in systems biology. Most methods for modeling and...

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Integrative Analysis of LC-MS based Glycomic and Proteomic Data

Wang, Minkun ;   Yu, Guoqiang ;   Ressom, Habtom

Tags Algorithms and computational tools for proteomicsAnalysis of high-throughput systems biology data

Studies associating changes in the levels of glycans and proteins with the onset of cancer have been widely investigated to identify clinically...

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Novel Protein Weight Matrix Generated from Amino Acid Indices

Chrysostomou, Charalambos ;   Seker, Huseyin

Tags Algorithms and computational tools for proteomics

In recent years, numerous protein weight matrices have been developed that include physical characteristics of proteins, such as local...

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Pan-Cancer Analysis for Studying Cancer Stage using Protein Expression Data

Mishra, Sameer ;   Kaddi, Chanchala D. ;   Wang, May D.

Tags Algorithms and computational tools for proteomicsBiomedical data-driven modelingPatient stratification

Pan-cancer analyses attempt to discover similar features among multiple cancers in order to identify fundamental patterns common to cancer...

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